Eric Guo's blog.cloud-mes.com

Hoping writing JS, Ruby & Rails and Go article, but fallback to DevOps note

Installation Log on Ubuntu 14.04 LTS on vSphere 5.5

• Permalink

My log to build a Ubuntu server to fit my software stack usage, R & Ruby.

Install SSH

Upgrade Ubuntu and enable SSH server
sudo apt-get update

sudo apt-get upgrade

sudo apt-get install open-vm-tools

sudo apt-get install openssh-server

Install JDK

sudo add-apt-repository ppa:webupd8team/java

sudo apt-get update && sudo apt-get install oracle-java7-installer

Install rvm

sudo su - # switch to root if not yet

apt-get install curl

curl -L get.rvm.io | bash -s master # install rvm

logout

sudo su -

rvm requirements # to install all depends

Install Ruby

rvm install ruby-2.2.3

gem source --remove https://rubygems.org/

gem source --add https://gems.ruby-china.com/

gem update --system

apt-get install libgmp3-dev

echo "gem: --no-document" >> /etc/gemrc

gem update

gem install bundler

Install Oracle Client

apt-get install unrar

apt-get install libaio-dev # must need if you want to use sqlplus

mkdir -p /opt/oracle && cd /opt/oracle

unrar x /home/eric/instantclient-all-linux.x64-11.2.0.4.0.rar .

chmod +x instantclient_11_2/sqlplus

ln -s /opt/oracle/instantclient_11_2/libclntsh.so.11.1 /opt/oracle/instantclient_11_2/libclntsh.so

ln -s /opt/oracle/instantclient_11_2/sqlplus /usr/local/bin/sqlplus

echo "/opt/oracle/instantclient_11_2" >> /etc/ld.so.conf.d/oracle_instantclient.conf

# append below line to /etc/enviroment file

ORACLE_BASE=/opt/oracle

ORACLE_HOME=/opt/oracle/instantclient_11_2

TNS_ADMIN=/opt/oracle/network/admin

LD_LIBRARY_PATH=/opt/oracle/instantclient_11_2

OCI_HOME=/opt/oracle/instantclient_11_2

OCI_LIB=/opt/oracle/instantclient_11_2

OCI_LIB_DIR=/opt/oracle/instantclient_11_2

OCI_INCLUDE_DIR=/opt/oracle/instantclient_11_2/sdk/include

NLS_LANG=AMERICAN_AMERICA.AL32UTF8

rvmsudo_secure_path=1

Install Oracle gems ruby-oci8

update the library and install ruby-oci8
reboot

sudo su -

ldconfig

mkdir -p network/admin

mv /home/eric/tnsnames.ora .

gem install ruby-oci8 # should be no any error here :-)

Install R

add R source
sudo vi /etc/apt/sources.list

# append below line to end of sources.list

# you can view mirror at http://cran.r-project.org/mirrors.html

deb http://cran.ism.ac.jp/bin/linux/ubuntu trusty/
prepare to install R 
apt-get update

sudo apt-key adv --keyserver keyserver.ubuntu.com --recv-keys 51716619E084DAB9

# replace your NO_PUBKEY error above, if pause/block port, using 80 as below line

gpg --keyserver hkp://keyserver.ubuntu.com:80 --recv-keys E084DAB9

gpg -a --export E084DAB9 | sudo apt-key add -

apt-get update # make sure no error here
install R
apt-get install r-base

Install ROracle

manual install the ROracle
wget http://cran.r-project.org/src/contrib/DBI_0.3.1.tar.gz

R CMD INSTALL DBI_0.3.1.tar.gz

wget http://cran.r-project.org/src/contrib/ROracle_1.2-1.tar.gz

R CMD INSTALL --configure-args='--with-oci-inc=/opt/oracle/instantclient_11_2/sdk/include --with-oci-lib=/opt/oracle/instantclient_11_2' ROracle_1.2-1.tar.gz

Install Passenger

Just following Passenger documentation

install phusionpassenger
sudo apt-key adv --keyserver hkp://keyserver.ubuntu.com:80 --recv-keys 561F9B9CAC40B2F7

sudo apt-get install -y apt-transport-https ca-certificates

 
sudo sh -c 'echo deb https://oss-binaries.phusionpassenger.com/apt/passenger trusty main > /etc/apt/sources.list.d/passenger.list'

sudo apt-get update

 
sudo apt-get install -y nginx-extras passenger
vilink
passenger_root /usr/lib/ruby/vendor_ruby/phusion_passenger/locations.ini;

passenger_ruby /usr/local/rvm/gems/ruby-2.2.3/wrappers/ruby;

passenger_max_pool_size 30;

Install R studio server

Install R studio server

sudo apt-get install gdebi-core

wget https://download2.rstudio.org/rstudio-server-0.99.473-amd64.deb

sudo gdebi rstudio-server-0.99.473-amd64.deb
vilink
# Server Configuration File

www-address=127.0.0.1
vilink
server {

  listen       80;

  server_name  cvprstudio;

  server_name  cvprstudio.sandisk.com;

  client_max_body_size 10m;

  location / {

    proxy_pass http://127.0.0.1:8787;

    proxy_redirect http://127.0.0.1:8787/ $scheme://$host/;

  }

}

cd /etc/nginx/sites-enabled/

ln -s /etc/nginx/sites-available/cvprstudio cvprstudio

service nginx restart

Install RStudio Shiny Server

Install RStudio Shiny Server

run as root
R -e "install.packages('shiny', repos='https://cran.rstudio.com/')"

wget https://download3.rstudio.org/ubuntu-12.04/x86_64/shiny-server-1.4.0.721-amd64.deb

gdebi shiny-server-1.4.0.721-amd64.deb
vilink
server {

  listen       80;

  server_name  shinyapp;

  server_name  shinyapp.sandisk.com;

  location / {

    proxy_pass http://127.0.0.1:3838;

    proxy_redirect http://127.0.0.1:3838/ $scheme://$host/;

  }

}

cd /etc/nginx/sites-enabled/

ln -s /etc/nginx/sites-available/shinyapp shinyapp

service nginx restart

Following patch process in previous blog to re-install the shiny

R CMD INSTALL shiny_0.12.2-server.tar.gz

Comments